Domain Specific Computing in Tightly-Coupled Heterogeneous Systems

Over the past several decades, researchers and programmers across many disciplines have relied on Moores law and Dennard scaling for increases in compute capability in modern processors. However, recent data suggest that the number of transistors per square inch on integrated circuits is losing pace with Moores laws projection due to the breakdown of Dennard scaling at smaller semiconductor process nodes. This has signaled the beginning of a new “golden age in computer architecture” in which the paradigm will be shifted from improving traditional processor performance for general tasks to architecting hardware that executes a class of applications in a high-performing manner. This shift will be paved, in part, by making compute systems more heterogeneous and investigating domain specific architectures. However, the notion of domain specific architectures raises many research questions. Specifically, what constitutes a domain? How does one architect hardware for a specific domain? In this dissertation, we present our work towards domain specific computing. We start by constructing a guiding definition for our target domain and then creating a benchmark suite of applications based on our domain definition. We then use quantitative metrics from the literature to characterize our domain in order to gain insights regarding what would be most beneficial in hardware targeted specifically for the domain. From the characterization, we learn that data movement is a particularly salient aspect of our domain. Motivated by this fact, we evaluate our target platform, the Intel HARPv2 CPU+FPGA system, for architecting domain specific hardware through a portability and performance evaluation. To guide the creation of domain specific hardware for this platform, we create a novel tool to quantify spatial and temporal locality. We apply this tool to our benchmark suite and use the generated outputs as features to an unsupervised clustering algorithm. We posit that the resulting clusters represent sub-domains within our originally specified domain; specifically, these clusters inform whether a kernel of computation should be designed as a widely vectorized or deeply pipelined compute unit. Using the lessons learned from the domain characterization and hardware platform evaluation, we outline our process of designing hardware for our domain, and empirically verify that our prediction regarding a wide or deep kernel implementation is correct

Reproductive Modes in Onion Thrips (Thysanoptera: Thripidae) Populations from New York Onion Fields

Thrips exhibit different reproductive modes including thelytoky (females produced from unfertilized eggs), arrhenotoky (males produced from unfertilized eggs and females produced from fertilized eggs) and deuterotoky (females and males produced from unfertilized eggs). We investigated patterns of reproductive modes in onion thrips, Thrips tabaci Lindeman, populations and potential effects of the bacterium Wolbachia and temperature on these modes. We also examined the possibility that male-producing T. tabaci populations were resistant to the frequently used insecticides, lambda-cyhalothrin and methomyl. In New York during 2002-2004, T. tabaci populations were sampled from 20 onion fields and reproductive mode was determined by identifying sex of progeny from virgins. Half of the populations were thelytokous and half were a mix of thelytokous, arrhenotokous and deuterotokous individuals, which we refer to as a male-producing population. In two of four cases, the reproductive mode of a population from the same onion field changed across years, suggesting that populations either mix or an external factor caused the change. To address the latter, we speculated that Wolbachia or high temperature mediated reproductive modes. Samples of T. tabaci representing each reproductive mode were examined for Wolbachia using diagnostic polymerase chain reaction (PCR), but it was not detected. Cytological examination of ovaries from two additional thelytokous lines also showed no evidence of Wolbachia. Similarly, high temperature did not affect sex allocation ratios in either thelytokous or male-producing populations. Male-producing T. tabaci populations were not positively correlated with resistance to lambda-cyhalothrin, or tolerance to methomyl. The role of the different reproductive modes in T. tabaci populations in onion fields remains unclea

Contributions of Function-Altering Variants in Genes Implicated in Pubertal Timing and Body Mass for Self-Limited Delayed Puberty

Context: Self-limited delayed puberty (DP) is often associated with a delay in physical maturation, but although highly heritable the causal genetic factors remain elusive. Genome-wide association studies of the timing of puberty have identified multiple loci for age at menarche in females and voice break in males, particularly in pathways controlling energy balance. Objective/Main Outcome Measures: We sought to assess the contribution of rare variants in such genes to the phenotype of familial DP. Design/Patients: We performed whole-exome sequencing in 67 pedigrees (125 individuals with DP and 35 unaffected controls) from our unique cohort of familial self-limited DP. Using a whole-exome sequencing filtering pipeline one candidate gene [fat mass and obesity-associated gene (FTO)] was identified. In silico, in vitro, and mouse model studies were performed to investigate the pathogenicity of FTO variants and timing of puberty in FTO+/- mice. Results: We identified potentially pathogenic, rare variants in genes in linkage disequilibrium with genome-wide association studies of age at menarche loci in 283 genes. Of these, five genes were implicated in the control of body mass. After filtering for segregation with trait, one candidate, FTO, was retained. Two FTO variants, found in 14 affected individuals from three families, were also associated with leanness in these patients with DP. One variant (p. Leu44Val) demonstrated altered demethylation activity of the mutant protein in vitro. Fto(+/-) mice displayed a significantly delayed timing of pubertal onset (P <0.05). Conclusions: Mutations in genes implicated in body mass and timing of puberty in the general population may contribute to the pathogenesis of self-limited DP.Peer reviewe

Impacts of the Tropical Pacific/Indian Oceans on the Seasonal Cycle of the West African Monsoon

The current consensus is that drought has developed in the Sahel during the second half of the twentieth century as a result of remote effects of oceanic anomalies amplified by local land–atmosphere interactions. This paper focuses on the impacts of oceanic anomalies upon West African climate and specifically aims to identify those from SST anomalies in the Pacific/Indian Oceans during spring and summer seasons, when they were significant. Idealized sensitivity experiments are performed with four atmospheric general circulation models (AGCMs). The prescribed SST patterns used in the AGCMs are based on the leading mode of covariability between SST anomalies over the Pacific/Indian Oceans and summer rainfall over West Africa. The results show that such oceanic anomalies in the Pacific/Indian Ocean lead to a northward shift of an anomalous dry belt from the Gulf of Guinea to the Sahel as the season advances. In the Sahel, the magnitude of rainfall anomalies is comparable to that obtained by other authors using SST anomalies confined to the proximity of the Atlantic Ocean. The mechanism connecting the Pacific/Indian SST anomalies with West African rainfall has a strong seasonal cycle. In spring (May and June), anomalous subsidence develops over both the Maritime Continent and the equatorial Atlantic in response to the enhanced equatorial heating. Precipitation increases over continental West Africa in association with stronger zonal convergence of moisture. In addition, precipitation decreases over the Gulf of Guinea. During the monsoon peak (July and August), the SST anomalies move westward over the equatorial Pacific and the two regions where subsidence occurred earlier in the seasons merge over West Africa. The monsoon weakens and rainfall decreases over the Sahel, especially in August.Peer reviewe

Optimasi Portofolio Resiko Menggunakan Model Markowitz MVO Dikaitkan dengan Keterbatasan Manusia dalam Memprediksi Masa Depan dalam Perspektif Al-Qur`an

Risk portfolio on modern finance has become increasingly technical, requiring the use of sophisticated mathematical tools in both research and practice. Since companies cannot insure themselves completely against risk, as human incompetence in predicting the future precisely that written in Al-Quran surah Luqman verse 34, they have to manage it to yield an optimal portfolio. The objective here is to minimize the variance among all portfolios, or alternatively, to maximize expected return among all portfolios that has at least a certain expected return. Furthermore, this study focuses on optimizing risk portfolio so called Markowitz MVO (Mean-Variance Optimization). Some theoretical frameworks for analysis are arithmetic mean, geometric mean, variance, covariance, linear programming, and quadratic programming. Moreover, finding a minimum variance portfolio produces a convex quadratic programming, that is minimizing the objective function ðð¥with constraintsð ð 𥠥 ðandð´ð¥ = ð. The outcome of this research is the solution of optimal risk portofolio in some investments that could be finished smoothly using MATLAB R2007b software together with its graphic analysis

Search for dark matter produced in association with bottom or top quarks in √s = 13 TeV pp collisions with the ATLAS detector

A search for weakly interacting massive particle dark matter produced in association with bottom or top quarks is presented. Final states containing third-generation quarks and miss- ing transverse momentum are considered. The analysis uses 36.1 fb−1 of proton–proton collision data recorded by the ATLAS experiment at √s = 13 TeV in 2015 and 2016. No significant excess of events above the estimated backgrounds is observed. The results are in- terpreted in the framework of simplified models of spin-0 dark-matter mediators. For colour- neutral spin-0 mediators produced in association with top quarks and decaying into a pair of dark-matter particles, mediator masses below 50 GeV are excluded assuming a dark-matter candidate mass of 1 GeV and unitary couplings. For scalar and pseudoscalar mediators produced in association with bottom quarks, the search sets limits on the production cross- section of 300 times the predicted rate for mediators with masses between 10 and 50 GeV and assuming a dark-matter mass of 1 GeV and unitary coupling. Constraints on colour- charged scalar simplified models are also presented. Assuming a dark-matter particle mass of 35 GeV, mediator particles with mass below 1.1 TeV are excluded for couplings yielding a dark-matter relic density consistent with measurements